Scaffold Ga0209434_1051101

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209434_1051101

Scaffold Ga0209434_1051101

Overview

Basic Information
Taxon OID	3300025122 Open in IMG/M
Scaffold ID	Ga0209434_1051101 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1277
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)	300
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F084099	Metagenome	112	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_10511012	F027156	GGAG	MIPKVGQLLRWYDNPLYCADDTELENDVGIVKEVQLEGVNFFDNDEYAYVVLIDWCKGPHTSYHDEQEYEESIRSGEIVVV
Ga0209434_10511014	F084099	GAGG	MKIGDIVTMNTPLTPERYGLGLIQKILRSREKSYRLVYHILWPDNTISCQYDNEIVLVGRVE
Ga0209434_10511016	F106167	GGAG	MEIGDIVKLMINPSVDWMHKYLEETFEVIDFPTESGVRVKMVGTDPEWHWIIGKSDFEIAEKKD

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.