Scaffold Ga0209644_1000379

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209644_1000379

Scaffold Ga0209644_1000379

Overview

Basic Information
Taxon OID	3300025125 Open in IMG/M
Scaffold ID	Ga0209644_1000379 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8705
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023219	Metagenome	211	Y
F065136	Metagenome	128	Y
F086194	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100037921	F065136	AGG	MNNTIRISSQGGMQYTFDNGYTLSIGCGTSHYSSNQDKDDAYGECTEVEVAVMNPAGGFVALEYDVAGFVKASLIPTLFRAVEDKDWEHIALLCGQEEYIHSENRRDLDPTSTQHQATGYIAEMDSYA
Ga0209644_100037924	F086194	N/A	VSVLRQFPEFTYEDAKSYLAERHDDYYDPEGERELIDMLEEREMDSHIEHIRSQGGDYWQNDAGEWCCG
Ga0209644_10003799	F023219	AGGA	MLNSISKIVRSNQNAVMIRVGSDKTAVYTIFNLKTRKLAYVGTLSGAKSSWNRNFKNSRQFVAKGNHRYLSA

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