NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1004376

Scaffold Ga0209644_1004376


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1004376 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2797
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001113Metagenome774Y
F002768Metagenome / Metatranscriptome531Y
F003611Metagenome477Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10043762F001113GAGGMSDIKLQGSNLFATFKTQKELGDYIEGHSVAEERRLLWLGVMFGSNFVAHQVNTTFDLTYKKDKKK
Ga0209644_10043765F003611N/ALKDEIMKELFWAFYFALHFAGAFLGIVIAINLSTWLGLSMFAFFIVKFMLMMPEIKRSI
Ga0209644_10043766F002768GAGMKRSWWSLKIHDYPNYEPNDADLEHIAEQIKQGMDQGELIQEDEGPASSKLQAL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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