NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1012803

Scaffold Ga0209644_1012803


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1012803 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1768
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000747Metagenome / Metatranscriptome908Y
F040923Metagenome / Metatranscriptome161Y
F047722Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10128031F047722GGAGMSNGNQLGKSLSVGHVVATVGLIIGGFTFIYDLRESVAIQAFQL
Ga0209644_10128032F000747N/AMFPTEFPIKAVCWDDISEVIQYHQEILGEYPVGKGWISSKDGPSFGAIMYNPTKPSWTFLTFHKKDGQEGVIICSITGGTMWEIINPGDESEKLEL
Ga0209644_10128033F040923GGAGGMPRRLRRIGRRDYPSRRVAYRMVNGRKFYEPQPRDFPYGPLPYVQNYYWVVGYTENDST
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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