NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1013674

Scaffold Ga0209644_1013674


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1013674 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1717
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011494Metagenome / Metatranscriptome290Y
F042376Metagenome / Metatranscriptome158N
F047110Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10136742F042376N/AMRKLINKWFRSEVKTYQGAMLRYFYTPVIGFALVLAIVCGFVIGFDEVFRYWRVAALNF
Ga0209644_10136743F047110N/AMKNNKMKTVVSINWKIRDLIREKLSFEKWHLDIFDFPASKKVLNKIKNTERELKQMKKDVFLAAMDEAAA
Ga0209644_10136744F011494AGGAVNEEGVVEEFVQLVGDQDHAALNDAIELAGRAGEDVVEHFADGSRVVVWELAGEEPWEGEDRFADGDALASAGFGTDEDYGCFDAGDEW
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