NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1013715

Scaffold Ga0209644_1013715


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1013715 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1715
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F011970Metagenome285Y
F044144Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10137152F002330N/AMIILDIMLKQIKQINETLKIGDKFTIYYAPTFTKNGEDQTTIYEPHQYEVNVRSAIWTKDCKINKTGSLTYFDVEKNAYRTAIQTLQSIRIYINKTMYVWREDK
Ga0209644_10137153F011970GAGGMPKTKVWLVIEKNVYGESQSFSVVKNHKNIDEAMRYKLCLEKLSDRDNQSYFLASDVDTVLENVAHHHNKSVENGSYYKNHPEVKLPEEAI
Ga0209644_10137154F044144N/AIIDALKYAEETLAKAQKSAQSFFEKKASTKERKEGLKSNFDKDSYSYDDDKITLSDCEDQIRVWAKALASQEIKRRPEGRQLAKLEVAKQDELDTIMESEAPSALITELDKKRQKVIGISWNTEPKAIAQE
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