Scaffold Ga0209644_1018915

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209644_1018915

Scaffold Ga0209644_1018915

Overview

Basic Information
Taxon OID	3300025125 Open in IMG/M
Scaffold ID	Ga0209644_1018915 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1487
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005314	Metagenome	405	Y
F049698	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10189154	F005314	AGGA	MVKPIDITNTVIVPKPQPRQDKLSSFFIGRAPIDNLDEGIEVEANPKDKIKQPHLDNSVIKDTEWTDLY
Ga0209644_10189155	F049698	AGG	MNKKAYAFFLKKTRRKNPIAKDLSDRRYRPRVVKDKTKYSRKDKHGQTNRHYEHSDSSETST

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