NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1000180

Scaffold Ga0209348_1000180


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000180 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36921
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (46.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006827Metagenome364Y
F010801Metagenome299Y
F018644Metagenome234Y
F045688Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100018024F010801GGAGMITEDHDELFDRIRGNLGEHFSNYMFIVMDDDGDLFYDYTNHRVGGMLLEETKKDMNSEPLDIIWEEEELSDDISEDDSLWN
Ga0209348_100018039F006827AGGAGMSEETINYLVYDTEADAIAKADAEGARRGYSYHRVGIGTRYHTYPQVTADAKYALVVDGYELTDDETAAIVTDVTFPTEGE
Ga0209348_100018040F045688GGAGMEAMTGRVAMGSAGFFACLGLQEINQVVSLVVGCATLIFLALSIYKLIKEMK
Ga0209348_100018043F018644N/AMEFFKYIFSEYNDNLLGMAFAYIGVISIIVMFLPKNNFISKLFKEFASIFTSLFKK
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