Scaffold Ga0209348

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1000384 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025127 Open in IMG/M

Scaffold ID

Ga0209348_1000384 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23843
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (37.29%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

23843

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (37.29%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F018189	Metagenome	236	Y
F024809	Metagenome	204	Y
F037769	Metagenome	167	N
F038719	Metagenome	165	Y
F047122	Metagenome	150	Y
F057382	Metagenome	136	N
F058218	Metagenome	135	N
F058913	Metagenome	134	Y
F080142	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100038411	F024809	AGGAGG	LNYSQKVLFNDWINRCPIDGVFVDEPISEVQMEDGRVGYLVKVFLTIDKEDWEQNQSPPGISENSENLPSQNRL
Ga0209348_100038415	F057382	N/A	MSKNDLTKAELKQLISTIVFFQLGARTKELKKIKTKLKNQLKEMEES
Ga0209348_100038417	F037769	AGGAG	MPYVQTQTDKEDEKLLRRLLSEKMPEKDADKIISNVFSDLIKWTYEDVVLHLTQVFNFTEQESDQLINDYDIISSATTTEVTMNPAPNFNATAPNDVRDYSANLWQARKCLSDANKLINATALTPRDYDNQDDFQDALLQRLHLAEHFVSINKYIDQHLDFAKHYTPQQKP
Ga0209348_100038418	F012584	N/A	MKLKPYLPEDVFIMEDENLPKEHHTDRFGKVMVFKKDLGWSVVVLKDVYTYFKHMKHTHWTYTPDTPHD
Ga0209348_100038420	F006793	N/A	MTNTRSNNEEMEQRINYAADELAKGKRAMDISKKLAKKYSVSIQQARDYVRQAKPILTASIAPNDRAFIFSKVMSCLEQDRLDARDQENLKEQGKATGGMVKMVGMLTSIDQVGSWDDAYNNHLFKNFSEAKKRVKHSDLDALDGETPEGEIPF
Ga0209348_100038422	F047122	GAGG	VKCPKCGKKAKASATKFIEYSHAQRRIRTCECGFKFITYERIEQDKQDFGQHSKQKKKEYYRKVLAELIDDLEGRTYLEKQKDSTIWEGV
Ga0209348_10003844	F058913	AGGAGG	MKLTKEEARWLDDKWNDFYYYFDVESMYQKDQEIFRKIGQKLSEVKQ
Ga0209348_10003845	F080142	GGAGG	MKVGAGEFIKTNSGEIIWGSEAFIDEVFKTLYGNEFRNEIWSYNDALHKIKNLVQLQEQN
Ga0209348_100038456	F058218	N/A	MFSKQYRQRYKDALKLQRWPLVDTAKMEKEKKEKDRQARLKRLYGLSDDKLKT
Ga0209348_10003848	F018189	GGAG	MELSKEQMEKVILELESNYNSKIFDDENLVEIINLFKKYLNSGETK
Ga0209348_10003849	F038719	AGGAGG	MDLKTREKILHRCEILRYMGDDGIPCIFDQLNDEELMEDCGWVLDKAHDDLDQYQFGVTKKIMNDASKRQSNDMWG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209348_1000384

Overview

Ecosystem & Geography

Associated Families

Sequences