Scaffold Ga0209348

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1001885 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025127 Open in IMG/M

Scaffold ID

Ga0209348_1001885 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10051
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (96.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10051

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (96.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019821	Metagenome	227	N
F021526	Metagenome	218	Y
F026851	Metagenome	196	Y
F027158	Metagenome	195	N
F081221	Metagenome	114	N
F101070	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100188510	F027158	GGAG	MTTTTKTPISELTLAQVISLTQAGLIGLKDGEAVYTDKADRAAKAGATKARRQAVLADVTEFFASPRGQKAKFFSVKPTSGMFAACAVAINQNVEASREDILWSLKQLEKKGLAKQVGIKGKVVGDDRGIEKKVMVIVPVSEVNNFQRRWVHSIEAAPAEDAPAQDDSAE
Ga0209348_100188511	F101070	AGGAGG	MGVGKIRVDPLEMEAGDLLITDGRMSLEVGDILLVVRRLQGHGKRHPFVDGRRVGNQWRLLSRLGVIDMWVDPHASWVVQVVKGTKKDSC
Ga0209348_100188513	F081221	AGGAG	MLTALYNVSVLITGFAAVICASLTAVALINLFASSMMTYRDDRLLLAWSLPSGLFFAGLLMVMLGWT
Ga0209348_100188517	F026851	AGGA	MTKQQIQQLLKDPVNMTPLEKAEVGRLRQAYFSAVAQETEAYIAAKEAYDDAKEHLDLKDPGEREVLMTLHKSMRDSERNMSIISTELEVHFGISA
Ga0209348_100188518	F021526	GGAG	MRYFSIDYRSPPSGMGQIIDTTKPKKKGNQYNYILVTYSGCGLEQDPSYVLTAHFSSQEADKQGWCGPILEDIINYLRSQGVTHVHDGELAYHHEGGDQEDFRGLFTLDRWAEIMMSYK
Ga0209348_100188519	F019821	GGAG	MTITNQTTLQELIELGLFKAADIEKFNNRITRGADRAARKALVEGTMSAIKALVASEAHDGNRYWSVKPAAHSLGFITYIEADRGTILKALTKLTEEGFLTKVGLKKVDGKLTELDKTQVNAFQLRYIVTPVEEADAAADEAAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209348_1001885

Overview

Ecosystem & Geography

Associated Families

Sequences