NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1002447

Scaffold Ga0209348_1002447


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1002447 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8764
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003219Metagenome / Metatranscriptome500Y
F032828Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10024478F003219AGGMQEHSDHPVIVPHIEEDIALPKNAREALPDMSPEEELTMRSNTVKLISDLAGETIEPSQDNMEEAEEVAKQMMEKPELKPDFGNYPNETIAYLAGMVAQTSHMVAKDLADIKLTVLNGLLQEATLAKSSRERIAAYKAVGEIDGVDAFKRKTEVTHITKSGEELEKELLATINELKGKVIHTREVVEVQDVEFEDD
Ga0209348_10024479F032828GAGGMRMEVNKEGILHLDLFDVETQEDQDKFIYYYLGLSRPAKKKFENAYYSLYHRGLLSDSEAQIIHTDLNGVTHIEVHPNDILKNLRMIKQTLAGEVVVENENE
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