NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1003043

Scaffold Ga0209348_1003043


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1003043 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7687
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003751Metagenome / Metatranscriptome470Y
F021558Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10030431F003751AGGAGGMATYKSDAGAILQPGNQINGLSAYNHEGVFGWPGLEAFEQIGYVKVTNVAADKASFKSFSITVPSPDRRVSDRVRDDRTSLVVKASAARPAYVYGASIAIAQDTPSGGLPSFPASPITADLGGTSTELLLLGPDNSGAPLGVPATQANGLAAASSTLTAANSLFTQGSENVTLAKIPFWSAVTTAGIDDQDAANAMLYKVTADTTFKVYNVNAVTGTAVNGDGVFISADDSTAGRAAYIVCRVNYLRPAKAVTWDDVSSFVDFASQVGGTDS
Ga0209348_10030435F021558N/AMSVFPRTSLGYTLGIKRDKDIYGQGEKVPKNPFEQSRGRIRMAGDKKVDLYSSERDYLASPYVRGDYLPDRFTASLPNLKMEIEE
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