NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1003149

Scaffold Ga0209348_1003149


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1003149 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7530
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052252Metagenome / Metatranscriptome143Y
F083374Metagenome / Metatranscriptome113Y
F098204Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100314910F052252N/AMSEYNPNDFVNPQQIRSPYTGETVRPTTNSFQHQGKTYEQAVFSDPVTGHQIKKGLISIKDKDGNIVADYNSVLNKSVTQQSRS
Ga0209348_10031493F098204N/AMSNTKKNKLDKTSSSDIEKTYSIDFLARFACLYEGVNLACDTAEKLGYDTTKSNVWIKPTALQKYVAERYGDMKYNMEQAAKGNETDEIYPWDQVYQ
Ga0209348_10031497F083374N/AMSLYSKKFNRALLEQDDVEDVELTDKEAMVDTLEPETDPADFDVETPDAPVANGQREMYDELNSWISEMDKFSDYLNGTDSSIQTKLNGAEDDTLFDSISNAETKKIARVAMEISSLSEILKGYLAGANDPKYKYV
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