NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1004057

Scaffold Ga0209348_1004057


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1004057 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6530
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002281Metagenome / Metatranscriptome575Y
F016059Metagenome250Y
F089521Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100405712F002281GAGGMKINYPKVAEHLGVKLRGDETFDELLKIEQQVKEYNERKARIAEENANIQRVDAQTRGVKKW
Ga0209348_10040572F016059AGGMKKYKITAGQTIYATYEIEVDAKNKQQAEKIALATSVNDWDEERFENYDALSIDEIAEVR
Ga0209348_10040579F089521N/AMKYIIINKWQLKDSNCKPNYYLKEVVDTLEIANAKLKAYQIIETDKNDNYFIVPFNENALLLTEEVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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