NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1006757

Scaffold Ga0209348_1006757


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1006757 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4826
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F018962Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10067572F004606N/AMKAHRIFDKGQSVYCLLASHTNPSILLPVKGIIMDSKWDPVNPLYQIRIVKFYDNMKFLKKYFFNMNFRHVFENRARKMILKSEDFKTTKSLEERLNDKDRERFYIVIESVMCTKTKVSLSKLFEKVQFYIISKNLKEIRETSARPFFKGPLSLDSVKEFDARYKKGFYDKFEKGDIDIDKYLNSLS
Ga0209348_10067573F008190GAGGMEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNTSTTIFYVLGSLTEETVGGIKEYVSTLSDKPITYKIYHSPDINVNGTAELFDDVIEFE
Ga0209348_10067574F018962N/AMIKIVLEPARNGVIKKVVDDNHGGGREHFTSTDVYEKTESDKDNFTYIKRFFFDLCDDLGLDVGNKFDPSVLDIRADWGTHYEPSIKDIDKKIKRLKSELEELEEWKNI
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