NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1125018

Scaffold Ga0209348_1125018


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1125018 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)776
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F024810Metagenome / Metatranscriptome204Y
F092017Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_11250181F024810N/APDNTAFILDLAYIQPVFTNIPGYGTVFVRDLDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVS
Ga0209348_11250182F003693GAGGMIKSKQALIDQSADASNSLGVQAEGMLLCAIQFPAAMTGTAVTFDFALDNSSWADVKETDGTEVSYTVSAGDVVRVDPSGWAFASNGYIRVTSNGSEAADRKIILHFRHS
Ga0209348_11250183F092017AGGAGMSMLLILKEGRNLDIESIPDQPLEPSFPIVNPTIKANDGLFALGAFGQAIFAAELVEE
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