NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1000476

Scaffold Ga0208919_1000476


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1000476 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26912
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (88.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F010167Metagenome307Y
F025051Metagenome / Metatranscriptome203Y
F036736Metagenome / Metatranscriptome169Y
F048916Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_100047615F048916N/AMGILSELAAPVANFGLGLYNADTYYSKECAWYEQVKFSEDTKQWLLQNNPPEIVSKDLAYVARNNDIYKEVCDAKEPAEEE
Ga0208919_100047616F002078AGGAGMDIAAMFEGQGWFAIVGQIVLVFTAITGSLPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAAPAVEKEIDEAKAKVRDRAGMPDVLDGL
Ga0208919_100047619F036736AGGAMTDKFNEMLIGALAIVGGFITKRVFNNHDSVSDRITALEKTVVTKDDLIHIERNVEMIVSHLINKKGDSS
Ga0208919_100047638F025051AGAAGMNKYINTNDHKNLSRTAHAILLPLMLLSNKNNEINKRYFTKTVSWISDYRTWNKYWKELEDKGILTQLDKSTWMVSPHECYTDAASHTALITKWNEVYNATS
Ga0208919_10004765F010167GGAGMIFTHVSLIQEGEAALFYRFDRKLNGYMIAGVLVTDNMEAKLDFVKVWKYFVSEVVQADDIYASIPIALSNSMFANYTTYYDTIEGRKIYKVDNYLKKQYSNYEKHKERAGSNT
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