NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1033201

Scaffold Ga0208919_1033201


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1033201 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1856
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035973Metagenome / Metatranscriptome171Y
F072759Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_10332013F035973N/AMREENYLYFANAGGNDTDKDMAMFPASTFRGAVTMSSTTTEFFFAPQDGTGTTANGVLLTHSDITASSTEADPVYADASNQHYAVMEEFAQLASGNRKNTTNFTVIRDLNTVPANEGAISATGISDVSAVAITID
Ga0208919_10332014F072759N/AMENYLYFRKLRTVKSTHEQDGTQQAMTAAFPAADIGVAANNDNLNEIAAISVTSKDGGGTGHATVLFDPTTIVPTLAYSTDARAIATGSVHWIEPSSQAYANGILTLDVHGTAGGYTLDDDDIITVYWKAGLETAFMYPVSALKGMVATDTNTTTLHFASIVGSATDDVVTIEHGNAKFEDVCKMINDACNAYPRDGRLITVIDGSDGMMTTLHPGNPAGITSIEYAPQGGAAGMAT
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