NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209594_1013374

Scaffold Ga0209594_1013374


Overview

Basic Information
Taxon OID3300025130 Open in IMG/M
Scaffold IDGa0209594_1013374 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3166
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameAsh Meadows Crystal Spring, Nevada
CoordinatesLat. (o)36.42Long. (o)-116.32Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054984Metagenome139Y
F085867Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209594_10133742F085867N/AMSERKPEPPLGARKAPRDLAAEPAGRPLTAREAGTRRSPTKFGAATDGWDAYNDWLDRVRQPAPPSRQAVISKSLYSIASYKNWADKARDAFDKPK
Ga0209594_10133743F054984N/AMERLLKCLDDLDDLTVVFRVQAPAVILTALLAVAFVAGFGALLLLGPPDLLAAP

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