Scaffold Ga0209128_1178658

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209128_1178658

Scaffold Ga0209128_1178658

Overview

Basic Information
Taxon OID	3300025131 Open in IMG/M
Scaffold ID	Ga0209128_1178658 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	615
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_11786583	F006383	GGAGG	MLDSADKMWAVQQPGTILRARHSAKYGQLALVLARAYSGPKPDNGYPPRQYVKMQWLATGERFEEMLVNAHNCFDIVSSCDTLSHSEN

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