NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209128_1190664

Scaffold Ga0209128_1190664


Overview

Basic Information
Taxon OID3300025131 Open in IMG/M
Scaffold IDGa0209128_1190664 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)585
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022285Metagenome215Y
F101914Metagenome102Y
F104033Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209128_11906641F104033AGGAGMIVFNDSYKSEGFEVAIEEVNKLLVDIGLKLEYNFIEDFVCDDGEYAYTLTIERFKELDDDKQLHLL
Ga0209128_11906642F101914AGGAGMTNNYTCSRCGCVHWDELKPISCIMCDNGEFYDSPDDFYDKEKLSKQTNYVKEKKDAED
Ga0209128_11906643F022285AGGAGMPKIKKPQTLIQWGNEEVTALELFKELDRLVAQPVMNLYEMDGDMYLSDYRKLSDAQWRINLALKKY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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