NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209128_1213803

Scaffold Ga0209128_1213803


Overview

Basic Information
Taxon OID3300025131 Open in IMG/M
Scaffold IDGa0209128_1213803 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072515Metagenome121Y
F092719Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209128_12138031F092719GGAGGMANQNLSPMQNEKNDDDTMGFEDPCPVCKEELYLDSEYTQRIGLIDDFDKVIGWICPHCKTEYDNDTKIVRFL
Ga0209128_12138032F072515N/ALAYPKAQSDGYVKKRIDKLLKTEKIQKMVKEEIREILDDEGVTNNWLIERYKTIADLAESDTAKLRSLDSLAKISGLFDTEEKKSEQVTVWAGFKPEQLAEVEKHGKPELVAHAEREE

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