NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1001047

Scaffold Ga0209232_1001047


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1001047 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15624
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.70%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F016813Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10010474F001740N/AMYNPNNPSNWSWSKAFDEMAKTVNQAELTQQCINHVLDYPGEANGVFMTLSKSQQDDVYELLNQVL
Ga0209232_10010476F016813N/AMLNITKLPVLNNNHEWLMDNEDYSELFERLNYNTEDYLIVYSYSSNFLEVIQELISYNIEFSHHSCHLSDESYLIININQE

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