NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1001072

Scaffold Ga0209232_1001072


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1001072 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15447
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (69.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000502Metagenome / Metatranscriptome1073Y
F029471Metagenome / Metatranscriptome188N
F062276Metagenome131N
F073589Metagenome / Metatranscriptome120N
F076607Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209232_100107212F029471AGGAGMMGSELNQQDYSDSRLNDMQDVLDCVDMKAGVTGFFNTVISPFADHPDWSMLAEWNANSIIGVFQRHHEQCIKSLDKTKDLMQTALREDVGNEITKLNVDKLIFRRDAQEVNIKRAESILNEFLLCYETTFGKKFVPQSKAPVKDVTKQMKEYNMTRLKEALGK
Ga0209232_100107214F000502N/AMEVVGKLMMILTGFILTMLGSITFIHSDHQTLGIIICFAGIVSMFAGLPNNQRDR
Ga0209232_100107215F076607AGGMTKYKQHIVDELAKLQFDYAECKIEMDEFIAGITRLGIDSPGDIEEHRSNAEEARYEYKVSQHQNKF
Ga0209232_100107233F062276N/AMNTIICLRDIFKKRKVSNKEVVTLFDNIADTVTIDLLKGNTIDAAQVALVSNVMQIASNYNNKKFAIDLLQGALAELESDHFIETGNKLS
Ga0209232_10010729F073589AGGAGMNYKVNIWKDDSLKREIVYSAENDIQAIQMASAATPDGCRSTYEQMEEQCPTEKEPTVQKEEDLLQKAS
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