NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1001483

Scaffold Ga0209232_1001483


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1001483 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12545
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012123Metagenome283Y
F041145Metagenome160N
F081207Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10014834F081207GGAGMRNKERYNKEIKSLRKLLADNQYTRTLSTTYHGFLNDMHMKLIGDGNVTPKMIKSIETAIHCYGNYNRPDIKIQRDNMLAKITKLKYLLSQCGYTQQYEREKMEFLDSITSRAHSRGNLTPKQAKYANNLYKQFNKRILP
Ga0209232_10014836F041145AGGMANISQNMLVEKLEMLIELCVETEPTPKQLLKMSGEKNADMTDLFTPELIDAKFYLQEVLEGSYEIHEMTEIMRGANTIWRWRQKVKKDGWPDMSNIEYRCGDLLKQKQKINAIKEYRAYMHDRGNKVSLKECKDWVDRLMVKMDLDN
Ga0209232_10014839F012123AGGMVKRNPCRVKKVEYREDGVHIVERRGYAQERKTIDGVESVFVMEGGDTGIGYWYPKDEVTLTKGKWTNNTGKVISKKSFYRRAK
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