NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1004600

Scaffold Ga0209232_1004600


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1004600 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6258
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F019114Metagenome231Y
F048285Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0209232_100460011F004603AGGAMIFSININGSIVDWCYTINNQEKQYHQTWIPKIRDIQIITKDLNGLTVSEVKKTILEDIQPDIQMVRDNTNKKARARREKNV
Ga0209232_100460013F048285N/AMKIDQEQLEKATAFILETNKYIYEQAEELALQHLQAEDNKNFKARIKRYEPESKETFMHFADEVTSWAECEKNYPLMDFIHKFFRIKKGYKNELY
Ga0209232_100460015F019114GGAGMKQLNSRMVEARDEFYRNRRNRGFMAFWWSDPLHYVLGLEVAIADVSGKSINFEAIVKLLPSSMGSRSTVATVLDDFVARKYMCKKVGKDKRKRVYTICPEAMKLMNEWFTKRDFSLKAV
Ga0209232_10046008F002399N/AMGEPMSIPKTRTHKSVIGQLRKKYGLKDNTPIHKVEQIMTPKDWKTFSDALTFPNGKPTQTGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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