Scaffold Ga0209232_1005004

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209232_1005004

Scaffold Ga0209232_1005004

Overview

Basic Information
Taxon OID	3300025132 Open in IMG/M
Scaffold ID	Ga0209232_1005004 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5950
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (94.44%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077930	Metagenome	117	Y
F094534	Metagenome	106	N
F096210	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100500410	F096210	GGAGG	MAYSQNWNVTDKVDYEGLKELLTSLVVDITDNAFAIKKSSDDGGTTVEVWIEGGLQGTPNPRLPPQCRGWRVVWVSCPQGYIDAFEIRR
Ga0209232_100500414	F094534	GGAGG	MQIIKWIDDYRSSFAVVVECKGKSYLVIDDSYHVLIYSSDREGVISEYPEICKIEGKMLSEVISDNRTFISNMRIWSKNDRNKVAINLETVII
Ga0209232_10050049	F077930	GGAG	MTLHNFTEALDEAMEFIAKEYSSQWEGDVHDFYALLVKANFSNQVFLDYLKHAIDNKVYLPSNVTCVVDKGRIAKVIIGGD

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