NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1006848

Scaffold Ga0209232_1006848


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1006848 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4925
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F003357Metagenome / Metatranscriptome492N
F007531Metagenome / Metatranscriptome349Y
F023755Metagenome / Metatranscriptome209N
F024414Metagenome / Metatranscriptome206Y
F071648Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10068481F024414AGGAGMGTRLADIIMDRHEDFLYEDSRAMKLTPYVMSERCLQVEMSNIYKDYKSGDYDTLTYILEGGFKGFHNMDSSELIEEY
Ga0209232_100684810F003357AGGAGGMTRNSWILRQIYTDAKNNLGWLFKVVLLAGGFIAGIKLLVFFSVPKEIVFPILWIGFILVAIYHWYSMKYDWKKDESKYDRASKRYMKKLKGAK
Ga0209232_100684811F007531GGAGMLDKIEKQILEFAKETGLTERIEIVHGTLYVKLWENVECDHFHKMIRTFYKNQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEIMDPTDIDDKGIWSEFAEEELMNNVPEDVDTMLDLMNDAEEGR
Ga0209232_100684812F000302AGGAGMIKTMTQDTKDRIADLERQKIDLENQLELLGYSGNLVRMHQIEEEIYEIEDSIRKLLP
Ga0209232_100684815F023755GGAGMTDKINMVINLSILALLIYLAVQVHELQNPPKYQPAVSMGMVDEQEFKYNIKTFLNNVIEEAITEQENK
Ga0209232_10068485F071648GGAGGMKRTFACTVCGVKFTHKKPETLVGKLGIIPVNLCKKHFKAVMKNDELWLNDHRKVA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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