NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1009024

Scaffold Ga0209232_1009024


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1009024 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4188
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020533Metagenome / Metatranscriptome223N
F031662Metagenome / Metatranscriptome182Y
F057324Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0209232_100902413F057324AGGAGMNIKNKNTINDGLVKDWLDKFDGNSEITLLSEIANNNICVSGMIDSILAYHVGEVEIAEDFYKRMWRSQS
Ga0209232_10090247F020533AGGMQDAIMLDQDDLVAEFERKVRNKKIFFEVINPGQTESKGVDIEAMIKENNKLKSELRIFKDIVDRSITADARRGFNG
Ga0209232_10090249F031662AGGAGMDFKIEKNVPVRTFNSPFCEALDQLEVGDSIGNLTKKEVYRYRPNFYTPTFRDRKFTFKKETGTMYRIWRVA
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