NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1033831

Scaffold Ga0209232_1033831


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1033831 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1943
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082527Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10338312F082527AGGAMTTLTTQLEALEKGGFSSEEISAWKQDKILTLENAGFESNEILAEFGYEPIDKGPIKKIWDNIINLGKEETKSTYEKLLEVEKNEPDNTSLKEKLVGEVFEVEKYWDRGFNMGIIDLIQNYHQLPGNDGTGLPDGYVLEPFEDTGIIERNIQNLAVITKDLPVYLTGALLTNLLTWGRAGKTGTAAGSGFFAGSIRETYLNMLQEGKVHSFSEFWDIYTKEGVKAGAKEAIQLGSAFKLGSYGKNFLSKLLLRVGGFEGSGA

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