Scaffold Ga0208299_1018613

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208299_1018613

Scaffold Ga0208299_1018613

Overview

Basic Information
Taxon OID	3300025133 Open in IMG/M
Scaffold ID	Ga0208299_1018613 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3142
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053341	Metagenome / Metatranscriptome	141	Y
F073652	Metagenome	120	Y
F101320	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10186131	F101320	N/A	NTVEVYQSVELGRTDVEKLFRKFANNSDGKYHLLNELLETENDKSTLYDVYNTLTNYSSHNQRAVKIGKRDSKDYKIETSKRDSIRSNEDRDFEVRNFIQSNDFLYYYHQGVANQVR
Ga0208299_10186133	F053341	AGGAG	MKELAKAVLLRAFLDSVGHLGSHGAIGHNEMGMLKGQAKDFIDPSKKQFKLICELADAEPEYIARLHDDLTYNYNCGKLKNLNTKYIIERLLEKL
Ga0208299_10186136	F073652	AGGAG	MNEKEIDIDNEIEKRWDDFYEWLHTCPFKWSQSRHPTSGMTAINFDIEEE

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