NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208299_1087533

Scaffold Ga0208299_1087533


Overview

Basic Information
Taxon OID3300025133 Open in IMG/M
Scaffold IDGa0208299_1087533 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1079
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005217Metagenome / Metatranscriptome408Y
F006717Metagenome366Y
F009558Metagenome316Y

Sequences

Protein IDFamilyRBSSequence
Ga0208299_10875331F005217N/AKRDPIYGREELGFRHDPNQGIDGEDPRFYLDLIDASIMSQGGKTEVQKYCLGVILLNHSIHKLFTPEVLSGYTDLLDRIYAHQVFYPMENYRIMDEFAFWVLLSRWGLRTSLFGDQDVTQTFLEKKHKNHFDPIVLHYTTEDEEKFAEWITDKKLDI
Ga0208299_10875332F009558N/AMYHRKSWEAKHYWVNQFGVIEHDIFAHIPPQHYVVKWKEGFERHEKHFDNKKKAQTFFRTVRKTATDFIRIVKWH
Ga0208299_10875333F006717N/AMVELWIALVLTWTPVVERVVDKEFNSEKECWDYYEVEIAPDTTVGEGKWGKQNLTSQNRRPDKNFHFKTNWTYPIRTYKGLGVTPSGKDQVWLSCEPK
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