NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10000031

Scaffold Ga0209336_10000031


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10000031 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62176
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (74.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008340Metagenome / Metatranscriptome335Y
F067642Metagenome125Y
F084307Metagenome / Metatranscriptome112Y
F095510Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209336_1000003110F008340GGAMFIKHFVRMLTREELSDEDVIVYFDVVQSVVPTKLLTAYDEEKAKVGIEVMAYTSEDDDGDMFIYEIILQDEIDADEGDEISDELFEEFPDIKFTFEASVEV
Ga0209336_1000003124F084307AGGAGMSTVQSLSNHLKHLEELHRELDEKITRHWEHHDSDDKIRQEKLEKLTLKREIELLKIRIKEMEDEG
Ga0209336_1000003130F095510AGGAGGMSSEQMETQAKTKLAILVKSIEPIVEQQLSEFTPAEIEFVLANFRKHLKYDLTRDFEKNREKHLKESPFDAIINDDLGLNNG
Ga0209336_1000003132F067642GGAGMEKPDPVEEAMKRICLDWPKKPYWIFTSPDQHKVYRQMRQDVCPELFKNAKGTPNKQLYSIGGVVVGKDEDYGNKENKAW
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