Scaffold Ga0209336_10001982

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209336_10001982

Scaffold Ga0209336_10001982

Overview

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10001982 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9818
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F019253	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_100019824	F006773	N/A	MNRIQTKTSLPWKGASEKQVDFFVEVGTTPYGKYGMYKEMIPVGTGSRGSHQEIADSVRLSNPDVFEKFELRQVISRG
Ga0209336_100019825	F015360	AGG	MDYLWAPKDEMLVSSLLDSLGFTRVGKSQRYPTGVKYDALVAICDVIGANEKTASLVASRTHQLQSERKATGKAPSIDSVVSALASGTMSEADLKQAMKKAGLIK
Ga0209336_100019828	F019253	AGAAGG	MNPIEKFNNFMTQHTDKVPLLSVQSIKDNRFTVLRKFLSASFENVEDNAWSVSQNLGKFIDALSTMEPEDVNKITNTVRKYEVKGTSSGIHGKRTYGYDKSRVDRTLIRRGRAN

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