NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10008203

Scaffold Ga0209336_10008203


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10008203 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4323
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015153Metagenome / Metatranscriptome257Y
F033251Metagenome178N
F067196Metagenome126N
F082525Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100082034F067196AGGAMPKFNKIEEKQKFFRNAMRKLDTGLPEEASPDLIKFFVLHVITAYEQEDCWDDIKGFVDFALKGMSEFDSARQAVEDADNLLEAIKNSKDK
Ga0209336_100082035F033251AGAAGGMANKRKSSKDFPVDRTFSTWTAKEIDQLLEYKATGFKHNEIGEFMGRSTKSVNVKLSRIRNSVNEANNPVDNLTPFQKDLDETLFGRVSPDDKPKKARGPYKPRATKLSLTPQPKAADAFNVPKKPVYVAIVLVLVIVAWYLGSMS
Ga0209336_100082036F082525GAGGMDYKINSGVPIPDVVLGRKRGKGKWQVLLSSMSNGDCVDIPNESYNSMYVAASRLGIDLLSRREADGLADGFVRIWRVSDDD
Ga0209336_100082038F015153AGGAMKLQEIFDAASVHLMGMDGPSLDADGDACVYRGRHGSCEYDGGLGELSGQMCAVGVFIADEHYSPDLEGQGIRRDRSVANAVARSWGQDYLTLDQISLLADLQDAHDETSRGSSLIPDHNWSKNIVASLDKVATKNHLRFDPNGASV
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