NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10010365

Scaffold Ga0209336_10010365


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10010365 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3724
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030894Metagenome / Metatranscriptome184Y
F068145Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100103655F030894N/AMDFIKYSEYLLRKLRERQDVLSQSLATGSATDYVQYQRIVGEISGLNFAEQEITALHGRMEDVEDD
Ga0209336_100103656F068145GGTGGMRNFRSKEMPYPSPSNKQAAKSMPSIPEPSDEGFAKATQLEQKTVNLEGKKVKTKGTGAATKGLDFTSYIN

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