NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10022296

Scaffold Ga0209336_10022296


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10022296 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2230
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F005495Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100222961F002716GGAGGMSQFMLETEEDMLGYLDINFGHGVSAVYTNSSGTASTINVILNNEYVEQEEGIGVEALKPIAYCRTIDVPSIAYGNSLNVSAIKDTNGNVLKAAQNYTVVNIQSDRTGFSALMLEKI
Ga0209336_100222962F001582AGAAGMPLESALDFDAYVDSTSGHGVTATFFEVQNSLWDSRLGLIDTWFDIDSGNSANINIIIDQEYFNIEGGTIPVAGYQPRAIVKAADVPYISQEDRLVVNAITTNHGNILKPETTFFVKTVQPDNTGMVSLVLEEQ
Ga0209336_100222963F005495N/AMLKWNGGGNTPTLNMKKYTILQDTIANGAKVLAGEVVELNEDIGLQLCAYKKAEIHVEKPKAKITERSVGLETSEVKVSKKRAKK
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