NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1000516

Scaffold Ga0209634_1000516


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1000516 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30089
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (13.04%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008782Metagenome / Metatranscriptome328Y
F018080Metagenome237Y
F052205Metagenome / Metatranscriptome143Y
F058456Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_100051613F018080N/AMEYLEIEIFKHFLKVYTYIVWNNKSVLGFISEDDIIELLDKKQVLDFYHFDKTNFKVLASKVDKYLHRND
Ga0209634_100051614F052205GAGMSLSNSDIDELFDGKPSEITNSQWLTIEGNIDLTSLTTTMKTDILNRLNDLSEEEAEEIITILYNNRYEKDPQKQWLKMHKDGVFRDRDF
Ga0209634_10005162F008782N/AMKKPIFRIFVSYEIKNKAAVTRKVTMGILDTFALTSNIDQIKKDQELIDRICYVNKKKLNKVEVTITNVDVEYQYGETTDRFDDEY
Ga0209634_100051643F058456N/AMKKMDILYLNEGHQAVVEFLMEDVKKIMYYATEDEIAGKYQDFLNILDSVYLYSNNFHETTLKIEGDDGAMAEFIFLIPNMLFYTTIGFLTALKTKENGDAMVVHLEKIANLCENSTGELADVLIDATDEKRLLEGVLQKETTNN
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Institute for Fundamental Biomedical Research
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