NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1000600

Scaffold Ga0209634_1000600


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1000600 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27954
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (12.96%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002629Metagenome / Metatranscriptome542Y
F006815Metagenome / Metatranscriptome364Y
F010919Metagenome / Metatranscriptome297Y
F011006Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_100060020F006815N/AMETNYSKETADSKFDEYVYRIEALCNKIEELKAKIEVSQIFKQ
Ga0209634_100060033F002629N/AMRVNEAAWEKLKKQIEFYTEADSSISDISINYQVKPAKNKNYLRLNLKIDKWNKITE
Ga0209634_100060044F010919N/ALWYINQYKTDMKDPVKLPLEEYRKLYAIKLRLEAYFSYMEDDRGVLKELAPSFLDDAKELINEYNKLTNEKAY
Ga0209634_100060045F011006N/AMKQIIDKFLIKKNIRPYKIIALSTGVIVEHYRNGKLKTEYYE
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