Scaffold Ga0209634_1011143

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209634_1011143

Scaffold Ga0209634_1011143

Overview

Basic Information
Taxon OID	3300025138 Open in IMG/M
Scaffold ID	Ga0209634_1011143 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5398
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051479	Metagenome	144	Y
F081783	Metagenome	114	N
F098061	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10111433	F098061	AGG	MITRRIRKELKIFFEDKELTDKERSFISGCLKAQQKHPQLTSRQWQIVCDIEKKYNNVESDK
Ga0209634_10111434	F081783	AGGAG	MLKWIRDKYDDWKFEKEFQARKKEIMKIDPFIYDLPDTNNFNIGSDIKNDNSKD
Ga0209634_10111439	F051479	N/A	MFIIACGDSYTQGEGLEKQTQAYPYLLSSNNITNFAQSGASEYLITTQIEQAVKLKPDLIVVGHTSEYRWEVWDPRNKCQQGFIVANHIMRNEKYYRNWILSEQILGNTRNIKEHKAAWHAAGMLYFSEIDLVQRLWSGA

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