NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1027436

Scaffold Ga0209634_1027436


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1027436 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3067
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037983Metagenome167N
F064200Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10274362F064200AGGAMIFLHRVIVEDSEATWKIYWFNPGILSHRRYIKKIQEEIYKVFPNETYSWADPAHQCFGYHLKDNIIVTNVCGSNDENLHVNKRYVELKDQNEIYYNKDFVCFYYDLDNKKKWSEVYYMRDDNPEVIAKTKLDEGLNIEWISEYYNDEFEKTGQNLFITGKCEDIYKWIDKQNVDIPKPFKNPIGMGMDDKPIVDHINTENAIKCEYDTKGNLVKLKFFGCVLRTKMKVKGNFSHLELSSGYISSINNSEQTEIVEINYDDYGNRIPSTIIKKIDDYIFFPKARENGEYERVILKDM
Ga0209634_10274364F037983N/AMFLHRVLIEDCKVITRVWWFDPTKLSEVKFTRKVHEEINRAFPNETYTYPVNHIYGMNHYDNCIIFHMCSPEIDEMKTLERKCELKAQNNILLGKAYIRYMYDMKNKNKYIEVVYRDKENFGEDNWSKSYRTGVPTTVQINTVSEFFDKDFNKIYESLLIHGYNNVQAVYDYADTLNKDLPKPIPVDKKLHKDDLFKFIFDMEGNLVKLQLFAHVDRVGIRDKGSNKTEYKADYADCINNLNETEIVIPEYDGNGNPIKSSQPKNNEEYILFPKARDKEYEKINFKDY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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