NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209634_1035332

Scaffold Ga0209634_1035332


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1035332 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2600
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F015994Metagenome / Metatranscriptome250Y
F029432Metagenome188Y
F058451Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10353322F058451N/AMTRNQLKQMWFNLPTSTIVTKTILVEMDKYEGRQGQGTVQITNDGPSGFSQFKTHQVNPIEYVLNCKEYKSKEYQLVIK
Ga0209634_10353323F015994N/AMLKEVKKDLFEKNMSNQELYQVWSKIKAKQEIDEWFVKLEKKYNEEQENKYY
Ga0209634_10353324F029432N/AMMKYPKIVGWSVVITVWTSCGIGLSCIQKQEQGNNEVVNTAEDIVEWIGYDLESGKIDSTIADTYILNLEEIIKYSKQ
Ga0209634_10353325F000126N/AMRDYSITKKTGEWYNTEVTDSYGNKYQNYFEFAHEANDWVYYVWSKEDWFNSVDSQELLYSAIQQCKEIDKKNNLTKIL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.