NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1006545

Scaffold Ga0209756_1006545


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1006545 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8539
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008782Metagenome / Metatranscriptome328Y
F009300Metagenome320Y
F016596Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_100654513F008782GGAMKKPIFRVFISYEIRNKKKITRKVNTGTLDTFVLTSNIKEIESDKELIDRICYINKKNPKESDVKIVDIDIENQYGETNDRFDDE
Ga0209756_10065455F016596N/AMTNKYSLNKIRKSRNEFEALLRIYGVSNLSLCKVLEVNYATSKKFIATPTNMRFIHAKRLADFIGLEIQDIVDTIVYDIK
Ga0209756_10065458F009300N/AMIKWKNTTYPSTFIGLSDELAKVRSMLSADVYNKNTEKYRGDKEHEIQSLGIFAELVARHVLDNNKGVKYKAAPLIEARPVVEADIIMQGIDEYNYIDVKGVRSNGNTLRVNYKAHNNHNKKVTHYLFIQPLNPLYARFCWATHEDVSKWDVVMSTYTKCYELKIQKHN
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