NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1009346

Scaffold Ga0209756_1009346


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1009346 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6696
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030110Metagenome / Metatranscriptome186N
F064230Metagenome129Y
F064767Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209756_100934613F064767GGAGMDIDEYIVAVRAADSMAKAWRSDVAILSNLQVVRLDEAQGTILEIVRWDL
Ga0209756_100934615F030110AGGAMPKTRAQLNRALRQEEMRNKIEASGYESHVAEVVKKLLDPEQEFDSIEVQRMKSAADLSIKMMAKFMPDLKSTEITGADGGDLVIAVQRKRFDGDD
Ga0209756_10093465F064230GAGGMTSRSYLPQMKCTECYKIMVPQFRKEYPHKLDGWSCDCGNSEKAILRERQYTREHDGYQAREL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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