NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1014408

Scaffold Ga0209756_1014408


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1014408 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4914
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080152Metagenome115N
F098078Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209756_101440813F080152AGGMKLSNLMRSHQLNEAKKEIDIHREYEAGDAFTSPREKGRVFIILYPYHAAQGVKKWTGIEFVLDGKYSYMASADVTTAGDEQAFKGYKKIKLTSKMKKQIQQVLKDPEEVDRINNSDTKLRDVERAIR
Ga0209756_10144082F098078GAGGMKLKYILIREGMYTTTQYWILPSGKVKKMRSGHQEYLDDEGLSYETAFKGGHIRLAITDDDGHPSAEWSKEASPAAKKALGKIVKKTDTLYYDKVAMTSGHGWRRKKYIKSGDTDYKGFLKLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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