NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1016748

Scaffold Ga0209756_1016748


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1016748 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4431
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005319Metagenome405Y
F005551Metagenome397Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_10167481F005319N/AVTDQTFYAIWILSFGLYLLIYTYWIPLRTQEKIESWLMSTESDETLLSSLDVITKKIREQMLIDFEEFMLPQARENLKKFWAGAMGAAAKEMKHSEEGGQLSLMHTIANDLSDQPWYIQALGSKLLPAITEAVKKQPKSTEKQILGMGLQK
Ga0209756_10167487F005551GAGMTLGPSESVSRAKDGKIYGWSGSKGLTSSGTTLLNYTNPAAFYLTRVTLGIDWSGISDGEVLSYIISVDGQALFVEKLVVLVNNIGIQPKMFEFMIPPNSTVKIQAFQDSNNGAASCILTGYRV
Ga0209756_10167489F005319GGCGGVTDQTFYAIWILSFGLYLLIYTYWIPLRTQKKIETWLMSSESDETLLSSLEVITKKIREQMLIDFEEFMLPQARENLQKFWAGAMGNAAQELKGSEEGSQLSLLHNMTQDLSSQPWYIQAAASKLLPMITDAAAKGSKGTTDAVVRMGLQK
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