NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1018004

Scaffold Ga0209756_1018004


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1018004 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4210
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001227Metagenome742Y
F012859Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_101800411F012859AGTAGGMVRNRKGLAPWSLAREAGIESATVDGTIEIPQYVQPVLDTGFVDEKGDWKGAKSSDKDFIAFGTFPAIANGGTILAPSVNADGTWPLDMTGYNDIFIAIRVTNAGTYTMNAVMGPDSNSFANLNPVNAAAKLRFCGGFMADGDQFTDVLDDAAETLANNVWNILTIQNRAKNQKLLQFSLTNNSGNTSTIETAFMRLV
Ga0209756_10180049F001227GGCGGMAAPLGETMVRRKVRRARRRKSFSINLLETGAGLAFLDAANAGTAAQSFIKGDINGGLKVLSSAFKTNKNDFIKIGVGTLAAKLVLGSMGGSKVLGSVGPLKLRA
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