NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1039892

Scaffold Ga0209756_1039892


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1039892 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2407
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039681Metagenome163Y
F044724Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0209756_10398922F044724AGGGGGMTSWDIATPTSLGTGVAKTEINGGQPITKPTQAQTLIEVVPYMASTGAMTAGQTNLTKVIIESNSINLLPKQFIAPPIQAGLGTFGSSLTPMLDTVECNTPLQIGATQQFQIYGENYIANTVANKLGVGLHYSTAQTNKKEMFYDSVANETQTGTSATTVSGENLTINDGTFLETITPVLVNGVVTVSESFIGSISVSSNDFENSMPLKVPCQPTSVALGSAIGVGLAKQPVYKNIHMGMKSSCLISHNLTIDEAQTATGNFAVGYGYTKN
Ga0209756_10398923F039681N/AMDYELPNPTKLRIKPTYNVGDYGEDIVFPLILSQASNLATLTPSTASFHQTEHDEALPIDALARFVSNSDKCELLHAGNDTNFDHTFLISPDMSFFSYKIALTFGIGLKVSAYTSGNVNVNNIHLTITEIGEGAGDTVIADLIVSAGSPNLTATGEQITLFHADVIQPIKFTKARPIKVRIQTEASKSGTATFQVGMLPVFPVIPTAVPKHWIESQIEIHAHASLDHAFPIWRDETNQEKMDYSGCSPDGCNT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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