NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209756_1058795

Scaffold Ga0209756_1058795


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1058795 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1830
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026851Metagenome196Y
F081221Metagenome114N
F087026Metagenome110Y
F094527Metagenome106N
F101070Metagenome102Y
F105104Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_10587951F094527N/ASLKQLEKQGLARQVGIKGEVVADDRGIDIKRMIVVPVSEVNNFQRRWVHTIEAAPAEDAPAQDDSAE
Ga0209756_10587952F101070GGAGGMGRGKIRVDPMELEAGDLIVTDGRMSLEVGDVLLAVCKLSDLEISQSNKRHPFVDGRRVGDHWRLLSRLGVVEIWLDPYASWVVQVVKGQKKTAT
Ga0209756_10587953F087026GGAGGMARGRWKAGDLVEVESTQTTGWGDEHHKHLVLVLKTYKSNRPPREQHYPLSAYLDETSNKVEELYEVLRDDGKYLKLGLKDYTWPGARLTNRLVQRSWAEE
Ga0209756_10587954F081221AGAAGGMDEVLHALYNILILLTGFSAIICASLAAVAITNIAASSAITYRDDKLLLAWAFPSGLFFSGLLMVLMGWT
Ga0209756_10587955F105104AGGAGMLHRIYYTNPAGADNYMIVPFDEIKGTVAFLESLDYEVVSYWPIEAEG
Ga0209756_10587956F026851AGGAMTQQQIRQLLKDPANMTPLEQAEVGRMKQAYFSAVAQETEAYISAKEAYEDAREFMDVKDPGEREVLMQLLKNMRDCERNMTIIATELETHFDISA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.