NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1001458

Scaffold Ga0209645_1001458


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1001458 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11835
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007012Metagenome360Y
F018077Metagenome237Y
F033759Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10014583F018077AGGAGMTVKNVFSQLEKLFGRNSEAYLIQLMNDGLMDIANKKGGYTVSATTDLEKSKRWYDIPEKVLSIERVEVLDTNDRYVLIPKLSDPHKLLRADTDASNEALK
Ga0209645_10014585F007012N/AMAIVYFCHRCDTKVECETKAEMVCKCGSYAKDHDDVRNHVNMRNTWSATTKIEFNHTTMDQDIAERNNR
Ga0209645_10014589F033759N/AMIIKAIILTTLLANEPTIVAMPPDKPKLERRRRGKQNKGRKRGGNGLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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